Correct, map filters do affect auto-collection, I should add a clarification indeed!
It would not work any other way, unfortunately, as when any item/resource/character is filtered out, it simply isn't loaded from the server and the app doesn't know about their existence (so cannot trigger collection due to proximity). The server does not actively monitor your position either (that would be an overkill and a potential privacy concern), so cannot trigger automated collections as well.
And pre-loading all data in the client regardless of filters (but just not showing it) would consume more t